You need gauges, intake, exhaust, and a tune. To have the equivalent power of the 6.0L, your tune needs to add about 80 horses. I wouldn't add more than about 80 horses until you have a "built" transmission that can take it.
Gauges:
... pre-turbo pyrometer, red line is 1,250°
... turbo boost, red line is 25 PSI
... tranny temp with sender in the side of the tranny, red line is 225°
Intake: Ford Severe Duty Air Induction System plus the gizmo needed for early '99s to install it right. About $200 from Tousley Ford Parts.
Exhaust. As a minimum, replace the stock muffler with a straight-through performance muffler such as the Walker BTM. Slightly better than the Walker BTM is a 4" performance exhaust system.
After you have gauges - not before- you can replace your stock tune with a single performance tune by having your tuner flash the PCM with the new tune. Or you can ger three or four tunes with a tuner/programmer such as the SCT X3 Power Flash. Or you can get a bunch of tunes with a multi-position chip. All of these tuning options are available from several different folks. I'm a fan of Jody Tipton at DP-Tuner, so I got my tunes from him.
Tuning - Ford Powerstroke 7.3L