I don't have any proof but I have been told that the vans are downrated because of cooling issues. Occasionally, I have to road test a van with the doghouse removed... it feels like there could be cooling issues.
IIRC, the vans use a different calibration from the pick-ups. There is probably a way to flash a van PCM with a pick up flash. It likely wouldn't be easy and might cause problems (other than mechanical) down the road.
Vehicle programming is part of the emissions control system. In some jurisdictions, techs can face some pretty impressive penalties for messing with them. Strangely enough, Joe Average can get away with nearly anything.
HTH