I moved your post out of our ATI Damper sale, it really wasn't appropriate there.
As for the other problems, I'm not really sure. Off the top of my head those issues don't sound related, but since everything is electronic they could be. Not sure where you are located, but if you are in our area, lets get the truck in and look at it. If not, I would recommend getting it to a shop with good Ford/Powerstroke knowledge and good diagnostic equipment so they can figure it out.